Data from: A test of genomic modularity among life-history adaptations promoting speciation with gene flow

Ragland G, Doellman MM, Meyers PJ, Hood GR, Egan SP, Powell THQ, Hahn DA, Nosil P, Feder JL

Date Published: July 28, 2017

DOI: http://dx.doi.org/10.5061/dryad.kn568

 

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Filtered vcf file with genotype probabilities
Description This is a vcf file generated using the GATK unified genotyper, then filtered as describe in the paper. The PL field provides the phred-scaled and normalized genotype probabilities produced using the GATK model.
Download PJM123.UG.GATK.all.filtered.HWE.vcf (78.73 Mb)
Details View File Details
Title File mapping barcodes and ids to population/phenotype
Description column 1 = inline barcode (5' end of the forward read), column 2 = sample id (sample id in the vcf file), column 3 = population_phenotype: Haw_L = Hawthorn late, Haw_E = Hawthorn early, Apple_L = Apple late, Apple_E = Apple early
Download PJM_12_barcode_map.txt (3.924 Kb)
Details View File Details
Title 140109_I1135_FCC2U5MACXX_L6_PJM_1_1.fq.gz
Description Illumina forward reads, lane 1
Download 140109_I1135_FCC2U5MACXX_L6_PJM_1_1.fq.gz (15.59 Gb)
Details View File Details
Title 140109_I1135_FCC2U5MACXX_L6_PJM_1_2.fq.gz
Description Illumina reverse reads, lane 1
Download 140109_I1135_FCC2U5MACXX_L6_PJM_1_2.fq.gz (15.20 Gb)
Details View File Details
Title 140114_I456_FCC3JBKACXX_L1_PJM_2_F_1.fq.gz
Description llumina forward reads, lane 2
Download 140114_I456_FCC3JBKACXX_L1_PJM_2_F_1.fq.gz (15.31 Gb)
Details View File Details
Title 140114_I456_FCC3JBKACXX_L1_PJM_2_F_2.fq.gz
Description Illumina reverse reads, lane 2
Download 140114_I456_FCC3JBKACXX_L1_PJM_2_F_2.fq.gz (15.35 Gb)
Details View File Details

When using this data, please cite the original publication:

Ragland GJ, Doellman MM, Meyers P, Hood GR, Egan SP, Powell TH, Hahn DA, Nosil P, Feder JL (2017) A test of genomic modularity among life-history adaptations promoting speciation with gene flow. Molecular Ecology 26(15): 3926–3942. http://dx.doi.org/10.1111/mec.14178

Additionally, please cite the Dryad data package:

Ragland G, Doellman MM, Meyers PJ, Hood GR, Egan SP, Powell THQ, Hahn DA, Nosil P, Feder JL (2017) Data from: A test of genomic modularity among life-history adaptations promoting speciation with gene flow. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.kn568
Cite | Share
Download the data package citation in the following formats:
   RIS (compatible with EndNote, Reference Manager, ProCite, RefWorks)
   BibTex (compatible with BibDesk, LaTeX)

Submissions have been temporarily disabled.

Search for data

Be part of Dryad

We encourage organizations to: