Data from: Carrion fly-derived DNA metabarcoding is an effective tool for mammal surveys: evidence from a known tropical mammal community

Rodgers TW, Xu CCY, Giacalone J, Kapheim KM, Saltonstall K, Vargas M, Yu DW, Somervuo P, McMillan WO, Jansen PA

Date Published: July 27, 2017

DOI: http://dx.doi.org/10.5061/dryad.bj5k0

 

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Title protaxscripts
Description Directory containing perl scripts used to run PROTAX
Download protaxscripts.zip (66.66 Kb)
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Title mammal16S_OTU
Description Fasta file containing all mammal 16S OTU sequences
Download mammal16S_OTU.fasta (6.517 Kb)
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Title mammal12S_OTU
Description Fasta file containing all mammal 12S OTU sequences
Download mammal12S_OTU.fasta (6.653 Kb)
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Title mammal16S_refseqs
Description Fasta file containing mammal 16S reference sequences used in training PROTAX
Download mammal16S_refseqs.fa (655.4 Kb)
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Title mammal12S_refseqs
Description Fasta file containing mammal 12S reference sequences used in training PROTAX
Download mammal12S_refseqs.fa (738.0 Kb)
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Title Mammalia_taxonomy
Description Full Linnean taxonomy of mammal species
Download Mammalia_taxonomy (469.2 Kb)
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Title protax_train
Description BASH commands used to train unweighted PROTAX model
Download protax_train.bash (7.356 Kb)
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Title protax_classify
Description BASH commands used to classify OTU sequences using unweighted PROTAX model
Download protax_classify.bash (2.084 Kb)
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Title protax_weighted_train
Description BASH commands used to train weighted PROTAX model
Download protax_weighted_train.bash (14.39 Kb)
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Title protax_weighted_classify
Description BASH commands used to classify OTU sequences using weighted PROTAX model
Download protax_weighted_classify.bash (3.662 Kb)
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Title BCI_sp_list
Description List of species known to be present on BCI
Download BCI_sp_list.txt (1.819 Kb)
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Title panama_sp_list
Description List of species known from Panama
Download panama_sp_list.txt (2.418 Kb)
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When using this data, please cite the original publication:

Rodgers TW, Xu CCY, Giacalone J, Kapheim KM, Saltonstall K, Vargas M, Yu DW, Somervuo P, McMillan W, Jansen PA (2017) Carrion fly-derived DNA metabarcoding is an effective tool for mammal surveys: evidence from a known tropical mammal community. Molecular Ecology Resources, online in advance of print. http://dx.doi.org/10.1111/1755-0998.12701

Additionally, please cite the Dryad data package:

Rodgers TW, Xu CCY, Giacalone J, Kapheim KM, Saltonstall K, Vargas M, Yu DW, Somervuo P, McMillan WO, Jansen PA (2017) Data from: Carrion fly-derived DNA metabarcoding is an effective tool for mammal surveys: evidence from a known tropical mammal community. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.bj5k0
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